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UMR ECOSYS - Ecologie fonctionnelle et écotoxicologie des agroécosystèmes

Articles de revues à comité de lecture 2018 - UMR EcoSys

2018

Abis, L., Loubet, B., Ciuraru, R., Lafouge, F., Dequiedt, S., Houot, S., Maron, P.-A., Bourgeteau-Sadet, S., 2018. Profiles of volatile organic compound emissions from soils amended with organic waste products. Science of the Total Environment, 636, 1333-1343. https://doi.org/10.1016/j.scitotenv.2018.04.232

Amossé, J., Bart, S., Pery, A. R., Pelosi, C., 2018. Short-term effects of two fungicides on enchytraeid and earthworm communities under field conditions. Ecotoxicology, 27(3), 300-312.  https://doi.org/10.1007/s10646-018-1895-7 

Amossé, J., Boros, G., Bart, S., Pery, A. R., Pelosi, C., 2018. First record of terrestrial Enchytraeidae (Annelida: Clitellata) in Versailles palace’s park, France. Opuscula Zoologica, 48 (Supplementum 2), 53-58. http://opuscula.elte.hu/

Andriamalala, A., Vieublé, L., Dumeny, V., Cambier, P., 2018. Fate of sulfamethoxazole, its main metabolite N-ac-sulfamethoxazole and ciprofloxacin in agricultural soils amended or not by organic waste products. Chemosphere, 191, 607-615. https://www.sciencedirect.com/science/article/pii/S0045653517316788

Aslam, S., Iqbal, A., Lafolie, F., Recous, S., Benoit, P., Garnier, P., 2018. Mulch of plant residues at the soil surface impact the leaching and persistence of pesticides: A modelling study from soil columns, Journal of Contaminant Hydrology, 214, 54-64. https://doi.org/10.1016/j.jconhyd.2018.05.008

Aubert, M., Trap, J., Chauvat, Hedde, M., Bureau, 2018. Forest humus forms as a playground for studying aboveground-belowground relationships: Part 2, a case study along the dynamic of a broad lived plain forest ecosystem. Applied Soil Ecology, 123, 398-408. https://doi.org/10.1016/j.apsoil.2017.09.005

Baey C., Mathieu A., Jullien A., Trevezas S., Cournède P.-H., 2018. Mixed-effects estimation in dynamic models of plant growth for the assessment of inter-individual variability. Journal of Agricultural,Biological and Environmental Statistics, 23 (2), 208-232http://dx.doi.org/doi:10.1007/s13253-017-0307-4

Baghdadi, N., El Hajj, Choker, Zribi, M., Bazzi, Vaudour, E., Gilliot, J.-M., Ebengo Mwampongo, D., 2018. Potential of Sentinel-1 Images for Estimating the Soil Roughness over Bare Agricultural Soils. Water, 10 (2), 131. doi:10.3390/w10020131

Bart, S., Roudine, S., Amossé, J., Mougin, C., Pery, A. R., Pelosi, C., 2018. How to assess the feeding activity in ecotoxicological laboratory tests using enchytraeids?. Environmental Science and Pollution Research.https://doi.org/10.1007/s11356-018-1701-3

Bart, S., Amossé, J., Lowe, C. N., Mougin, C., Pery, A. R., Pelosi, C., 2018. Aporrectodea caliginosa, a relevant earthworm species for a posteriori pesticide risk assessment: current knowledge and recommendations for culture and experimental design. Environmental Science and Pollution Research.  https://doi.org/10.1007/s11356-018-2579-9

Barthod, J., Rumpel, C., Calabi-Floody, M., Mora, Bolan, N., Dignac, M.-F, 2018. Adding worms during composting of organic waste with red mud and fly ash reduces CO 2 emissions and increases plant available nutrient contents. Journal of Environmental Management, 222, 207-215. , https://doi.org/10.1016/j.jenvman.2018.05.079

Baveye, P., Berthelin, J., Tessier, D., Lemaire, G., 2018. The “4 per 1000” initi ative: A credibility issue for the soil science community?. Geoderma, 309 (Supplement C), 118-123. doi: 10.1016/j.geoderma.2017.05.005

Bechet B., Joimel S., Jean-Soro L., Hursthouse A., Agboola A., Leitão T.E., Costa H., do Rosário Cameira M., Le Guern C., Schwartz C., Lebeau T., 2017. Spatial variability of trace elements in allotment gardens of four European cities: assessments at city, garden, and plot scale. Journal of Soils and Sediments, 18(2), 391-406. http://dx.doi.org/doi:10.1007/s11368-016-1515-1

Bertin, D., Ferrari, B. J., Labadie, P., Sapin, A., Da Silva Avelar, D., Beaudouin, R., Pery, A., Garric, Budzinski, Babut, M., 2018. Refining uptake and depuration constants for fluoroalkyl chemicals in Chironomus riparius larvae on the basis of experimental results and modelling. Ecotoxicology and Environmental Safety, 149, 284-290. https://doi.org/10.1016/j.ecoenv.2017.12.011

Borg J., Kiær L.P., Lecarpentier C., Goldringer I., Gauffreteau A., Saint-Jean S., Barot S., Enjalbert J., 2018. Unfolding the potential of wheat cultivar mixtures: A meta-analysis perspective and identification of knowledge gaps. Field Crops. 221, 298-313. http://dx.doi.org/doi:10.1016/j.fcr.2017.09.006

Brimo, K., Garnier, P., Lafolie, F., Séré, G., Ouvrard, S., 2018. In situ long-term modeling of phenanthrene dynamics in an aged contaminated soil using the VSOIL platform. Science of the Total Environment, 619-620, 239-248. https://doi.org/10.1016/j.scitotenv.2017.11.089

Brimo, K., Ouvrard, S., Houot, S., Lafolie, F., Garnier, P., 2018. Modelling the fate of PAH added with composts in amended soil according to the origin of the exogenous organic matter. Science of the Total Environment, 616-617, 658-668. https://doi.org/10.1016/j.scitotenv.2017.10.269

Cardinael, R., Guenet, B., Chevallier, T., Dupraz, C., Cozzi, T., Chenu, C., 2018. High organic inputs explain shallow and deep SOC storage in a long-term agroforestry system – combining experimental and modeling approaches. Biogeosciences, 15(1), 297-317. https://doi.org/10.5194/bg-15-297-2018

Cassigneul, A., Benoit, P., Nobile, C., Bergheaud, V., Dumeny, V., Etievant, V., Maylin, A., Justes, E., Alletto, L., 2018. Behaviour of S-metolachlor and its oxanilic and ethanesulfonic acids metabolites under fresh vs . partially decomposed cover crop mulches: A laboratory study. Science of the Total Environment, 631-632, 1515-1524. https://doi.org/10.1016/j.scitotenv.2018.03.143

Cécillon, L., Baudin, F., Chenu, C., Houot, S., Jolivet, R., Kätterer, T., Lutfalla, S., Macdonald, A., van Oort, F., Plante, A. F., Savignac, F., Soucémarianadin, L., N., Barré, P. 2018. A model based on Rock-Eval thermal analysis to quantify the size of the centennially persistent organic carbon pool in temperate soils. Biogeosciences, 15(9), 2835-2849. https://doi.org/10.5194/bg-15-2835-2018

Chenu, C., Angers, D. A., Barré, P., Derrien, D., Arrouays, D., Balesdent, J., 2018. Increasing organic stocks in agricultural soils: Knowledge gaps and potential innovations. Soil and Tillage Research. https://doi.org/10.1016/j.still.2018.04.011

Cheviron, N., Grondin, V., Mougin, C., 2018. Biochem-Env: a platform of biochemistry for research in environmental and agricultural sciences. Environmental Science and Pollution Research, 25 (7), 6154-6157 DOI:10.1007/s11356-017-8973-x

Clobert J., Chanzy A., Galliard J.-F.L., Chabbi A., Greiveldinger L., Caquet T., Loreau M., Mougin C., Pichot C., Roy J., Saint-André L., 2018. How to integrate experimental research approaches in ecological and environmental studies: AnaEE France as an example. Frontiers in Ecology and Evolution, 6, article no 43, 13 p.  https://doi.org/10.3389/fevo.2018.00043

Collin, F.,  Bancal, P., Spink, J., Kock Appelgren, P., Smith, J., Paveley, ND., Bancal, M-O., Foulkes, J., 2018. Wheat lines exhibiting variation in tolerance of Septoria tritici blotch differentiated by grain source limitation. Field Crops Research, 217, 1-10 https://doi.org/10.1016/j.fcr.2017.11.022

Cornu, S, Samouelian, A., Ayzac, A., Montagne, D., 2018. Soluble and colloidal translocation of Al, Fe, Si and Mn in an artificially drained French Retisol. Geoderma, 330, 193-203 https://doi.org/10.1016/j.geoderma.2018.05.032

Crème, A., Rumpel, C., Le Roux, X., Romian, Lan, Chabbi, A., 2018. Ley grassland under temperate climate had a legacy effect on soil organic matter quantity, biogeochemical signature and microbial activities. Soil Biology and Biochemistry, 122, 203-210. https://doi.org/10.1016/j.soilbio.2018.04.018

Daniele, G., Lafay, F., Pelosi, C., Fritsch, C., Vulliet, E., 2018. Development of a method for the simultaneous determination of multi-class pesticides in earthworms by liquid chromatography coupled to tandem electrospray mass spectrometry. Analytical and Bioanalytical Chemistry, 410, 20, 5009-5018. https://doi.org/10.1007/s00216-018-1151-2

de Vallavieille-Pope, C., Bahri, B., Leconte, M., Zurfluh, O., Huard, F., Belaid, Y., Maghrebi, E., Huber, L., Launay, M., Bancal, M.-O., 2018. Thermal generalist behavior of invasive Puccinia striiformis f. sp. Tritici strains under current and future climate conditions. Plant Pathology, 67, 1307-1320. https://doi.org/10.1111/ppa.12840

Ehrhardt F., Soussana J.F., Bellocchi G., Grace P., McAuliffe R., Recous S., Sandor R., Smith P., Snow V., Migliorati M.D.A., Basso B., Bhatia A., Brilli L., Doltra J., Dorich C.D., Doro L., Fitton N., Giacomini S.J., Grant B., Harrison M.T., Jones S.K., Kirschbaum M.U.F., Klumpp K., Laville P., Leonard J., Liebig M., Lieffering M., Martin R., Massad R.S., Meier E., Merbold L., Moore A.D., Myrgiotis V., Newton P., Pattey E., Rolinski S., Sharp J., Smith W.N., Wu L., Zhang Q., 2018. Assessing uncertainties in crop and pasture ensemble model simulations of productivity and N2 O emissions. Global Change Biology, 24(2), e603-e616. http://dx.doi.org/doi:10.1111/gcb.13965

Fortineau, A., Bancal, P., 2018. An innovative light chamber for measuring photosynthesis by three-dimensional plant organs. Plant Methods, 14 (1). , https://doi.org/10.1186/s13007-018-0288-5

Franqueville, D., Benhamou, C., Pasquier, C., Hénault, C., Drouet, J.-L., 2018. Modelling reactive nitrogen fluxes and mitigation scenarios on a landscape in Central France. Agriculture, Ecosystems and Environment, 264, 99-110. https://doi.org/10.1016/j.agee.2018.05.019

Funkuin, N. Y., Demyan, M. S., Rasche, Dignac, M.-F., Schulz, E., Kätterer, T., Müller, T., Cadisch, G., 2018. Coupling pyrolysis with mid-infrared spectroscopy (Py-MIRS) to fingerprint soil organic matter bulk chemistry. Journal of Analytical and Applied Pyrolysis, 133, 176-184. https://doi.org/10.1016/j.jaap.2018.04.004

Garin G., Pradal C., Fournier C., Claessen D., Houles V., Robert C., 2018. Modelling interaction dynamics between two foliar pathogens in wheat: a multi-scale approach. Annals of Botany, 121(5), 18, 927–940.  http://dx.doi.org/doi:10.1093/aob/mcx186

Geng, C., Bergheaud, V., Garnier, P., Zhu, Y.-G., Haudin, C.-S., 2018. Impact of sludge treatments on the extractability and fate of acetyl sulfamethoxazole residues in amended soils. Chemosphere, 194, 828-836. https://doi.org/10.1016/j.chemosphere.2017.12.003

Goulas, A., Livoreil, B., Grall, N., Benoit, P., Couderc-Obert, C., Dagot, C., Patureau, D., Petit, F., Laouénan, C., Andremont, A., 2018. What are the effective solutions to control the dissemination of antibiotic resistance in the environment? A systematic review protocol. Environmental Evidence, 7 (1). https://doi.org/10.1186/s13750-018-0118-2

Goulas, A., Sabourin, L., Asghar, F., Haudin, C.-S., Benoit, P., Topp, E., 2018. Explaining the accelerated degradation of ciprofloxacin, sulfamethazine, and erythromycin in different soil exposure scenarios by their aqueous extractability. Environmental Science and Pollution Research, 25(16), 16236-16245. https://doi.org/10.1007/s11356-018-1834-4

Hafner S.D., Pacholski A., Bittman S., Burchill W., Bussink W., Chantigny M., Carozzi M., Génermont S., Häni C., Hansen M.N., Huijsmans J., Hunt D., Kupper T., Lanigan G., Loubet B., Misselbrook T., Meisinger J.J., Neftel A., Nyord T., Pedersen S.V., Sintermann J., Thompson R.B., Vermeulen B., Vestergaard A.V., Voylokov P., Williams J.R., Sommer S.G., 2018. The ALFAM2 database on ammonia emission from field-applied manure: Description and illustrative analysis. Agricultural and Forest Meteorology, 258, 66-79. http://dx.doi.org/doi:10.1016/j.agrformet.2017.11.027

Joimel, S., Grard, B., Auclerc, A., Hedde, M., Le Doaré, N., Salmon, S., Chenu, C., 2018. Are Collembola “flying” onto green roofs?. Ecological Engineering, 111, 117-124. https://doi.org/10.1016/j.ecoleng.2017.12.002Jia, Y., Xiao, T., Sun, Yang, F., Baveye, P., 2018. Microcolumn-based speciation analysis of thallium in soil and green cabbage. Science of the Total Environment, 630, 146-153. https://doi.org/10.1016/j.scitotenv.2018.02.147

Joimel, S., Capiaux, H., Schwartz, C., Hedde, M., Lebeau, T., Le Guern, C., Nahmani, J., Pernin, C., Salmon, S., Santorufo, L., Béchet, B., Cortet, J., 2018. Effect of Geogenic Lead on Fungal and Collembolan Communities in Garden Topsoil. Pedosphere, 28 (2), 215-226. https://doi.org/10.1016/S1002-0160(18)60022-0

Juyal, A., Eickhorst, T., Falconer, R., Baveye, P., Spiers, A., Otten, W., 2018. Control of pore geometry in soil microcosms and its effect on the growth and spread of Pseudomonas and Bacillus sp. Frontiers in Environmental Science, 6 article 73, 12 p.   https://www.frontiersin.org/articles/10.3389/fenvs.2018.00073/abstract

Leloutre, C., Pery, A. R., Porcher, J.-M., Beaudouin, R., 2018. A bioenergetics model of the entire life cycle of the three-spined stickleback, gasterosteus aculeatus . Ecology of Freshwater Fish, 27 (1), 116-127. DOI : 10.1111/eff.12329

Le Morvan-Quéméner, A., Kammer, J., Lamaud, E., Loubet, B., Personne, E., Stella, P., 2018. Impact of parameterization choices on the restitution of ozone deposition over vegetation. Atmospheric Environment, 178, 49-65. https://doi.org/10.1016/j.atmosenv.2018.01.003

Loubet B., Carozzi M., Voylokov P., Cohan J.-P., Trochard R., Génermont S., 2018. Evaluation of a new inference method for estimating ammonia volatilisation from multiple agronomic plots. Biogeosciences, 15, 11, 3439-3460. http://dx.doi.org/doi:10.5194/bg-15-3439-2018

Marín-Benito, J. M., Alletto, L., Barriuso, E., Bedos, C., Benoit, P., Pot, V., Mamy, L., 2018. Pesticide fate modelling in conservation tillage: Simulating the effect of mulch and cover crop on S-metolachlor leaching. Science of the Total Environment, 628-629, 1508-1517. https://doi.org/10.1016/j.scitotenv.2018.02.144

Maron, P.-A., Sarr, A., Kaisermann, A., Lévêque, J., Mathieu, Guigue, Karimi, B., Bernard, L., Dequiedt, S., Terrat, S., Chabbi, A., Ranjard, L., 2018. High microbial diversity promotes soil ecosystem functioning. Applied and Environmental Microbiology, 84 (9 ), e02738-17. https://doi.org/10.1128/AEM.02738-17.

Mathieu, A., Vidal, T., Jullien, A., Wu, Q., Chambon, C., Bayol, B., Cournede, P.-H., 2018. A new methodology based on sensitivity analysis to simplify the recalibration of functional–structural plant models in new conditions. Annals of Botany. https://doi.org/10.1093/aob/mcy080

Paetsch, L., Mueller, Kögel-Knabner, I., von Lützow, Girardin, C., Rumpel, C., 2018. Effect of in-situ aged and fresh biochar on soil hydraulic conditions and microbial C use under drought conditions. Scientific Reports, 8 (1), 6852. , https://www.nature.com/articles/s41598-018-25039-x

Pelosi, C., Römbke, J., 2018. Enchytraeids as bioindicators of land use and management. Applied Soil Ecology, 123, 775-779. doi: 10.1016/j.apsoil.2017.05.014

Pham, H. N., Pham, Nguyen, Meiffren, G., Brothier, Lamy, I., Michalet, Dijoux-Franca, Nazaret, S., 2018. Influence of metal contamination in soil on metabolic profiles of Miscanthus x giganteus belowground parts and associated bacterial communities. Applied Soil Ecology, 125, 240-249. https://doi.org/10.1016/j.apsoil.2018.01.004

Portell, X., Pot, V., Garnier, P., Otten, W., Baveye, P., 2018. Microscale heterogeneity of the spatial distribution of organic matter can promote bacterial biodiversity in soils: Insights from computer simulations. Frontiers in Microbiology., https://www.frontiersin.org/articles/10.3389/fmicb.2018.01583/abstract

Robert, C., Garin, G., Abichou, M., Houlès, Pradal, C., Fournier, C., 2018. Plant architecture and foliar senescence impact the race between wheat growth and Zymoseptoria tritici epidemics. Annals of Botany, 21(5), 975–989. , http://dx.doi.org/doi:10.1093/aob/mcx192

Robin M.H., Bancal M.O., Cellier V., Delos M., Felix I., Launay M., Magnard A., Olivier A., Robert C., Rolland B., Sache I., Aubertot J.N., 2018. IPSIM-Web, an online resource for promoting qualitative aggregative hierarchical network models to predict plant disease risk: application to brown rust on wheat. Plant Disease, 102(3), 488-499. http://dx.doi.org/doi:10.1094/PDIS-12-16-1816-SR

Rumpel, C., Lehmann, J., Chabbi, A., 2018. ‘4 per 1,000’ initiative will boost soil carbon for climate and food security. Nature, 553 (7686), 27-27. doi: 10.1038/d41586-017-09010-w

Sadet-Bourgeteau, S., Houot, S., Dequiedt, S., Nowak, V., Tardy, V., Terrat, S., Montenach, D., Mercier, V., Bouhidel, K., Chemidlin, N., Maron, P.-A., 2018. Lasting effect of repeated application of organic waste products on microbial communities in arable soils. Applied Soil Ecology, 125, 278-287. https://doi.org/10.1016/j.apsoil.2018.02.006

Senapati, N., Chabbi, A., Smith, P., 2018. Modelling daily to seasonal carbon fluxes and annual net ecosystem carbon balance of cereal grain-cropland using DailyDayCent: A model data comparison. Agriculture, Ecosystems and Environment, 252, 159-177. https://doi.org/10.1016/j.agee.2017.10.003

Shahzad, T., Rashid, M. I., Maire, V., Barot, S., Perveen, N., Alvarez, G., Mougin, C., Fontaine, S., 2018. Root penetration in deep soil layers stimulates mineralization of millennia-old organic carbon. Soil Biology and Biochemistry, 124, 150-160, https://doi.org/10.1016/j.soilbio.2018.06.010

Soucémarianadin, L., Cécillon, L., Chenu, C., Baudin, F., Nicolas, M., Girardin, C., Barré, P., 2018. Is Rock-Eval 6 thermal analysis a good indicator of soil organic carbon lability? – A method-comparison study in forest soils. Soil Biology and Biochemistry, 117, 108-116. https://doi.org/10.1016/j.soilbio.2017.10.025

Soucémarianadin, L. N., Cecillon, L., Guenet, B., Chenu, C., Baudin, F., Nicolas, M., Girardin, C., Barré, 2018. Environmental factors controlling soil organic carbon stability in French forest soils. Plant and Soil, 426 (1-2), 267-286. https://doi.org/10.1007/s11104-018-3613-x

Soufan, R., Delaunay, Y., Vieublé, L., Shor, L., Garnier, P., Otten, W., Baveye, P., 2018. Pore-scale monitoring of the effect of microarchitecture on fungal growth in a two-dimensional soil-like micromodel. Frontiers in Environmental Science, 6, article 68, 11 p. https://www.frontiersin.org/articles/10.3389/fenvs.2018.00068/abstract

Taheri, s., Pelosi, C., Dupont, L., 2018. Harmful or useful? A case study of the exotic peregrine earthworm morphospecies Pontoscolex corethrurus. Soil Biology and Biochemistry, 116, 277-289. doi: 10.1016/j.soilbio.2017.10.030

Traoré, H., Crouzet, O., Mamy, L., Sireyjol, C., Rossard, V., Servien, R., Latrille, E., Martin-Laurent, F., Patureau, D., Benoit, P., 2018. Clustering pesticides according to their molecular properties, fate, and effects by considering additional ecotoxicological parameters in the TyPol method. Environmental Science and Pollution Research, 25 (5), 4728-4738. https://doi.org/10.1007/s11356-017-0758-8

Vaudour, E., Cerovic, Z., Ebengo Mwampongo, D., Latouche, G., 2018. Predicting Key Agronomic Soil Properties with UV-Vis Fluorescence Measurements Combined with Vis-NIR-SWIR Reflectance Spectroscopy: A Farm-Scale Study in a Mediterranean Viticultural Agroecosystem. Sensors, 18 (4), 1157. , http://www.mdpi.com/1424-8220/18/4/1157/htm

Vidal, T., Gigot, C., Pope de Vallavieille, C., Huber, L., Saint-Jean, S., 2018. Contrasting plant height can improve the control of rain-borne diseases in wheat cultivar mixture: modelling splash dispersal in 3-D canopies. Annals of Botany, 121(7), 1299-1308. https://doi.org/10.1093/aob/mcy024

Vogel, L., Pot, V., Makowski, D., Garnier, P., Baveye, P., 2018. To what extent do uncertainty and sensitivity analyses help unravel the influence of microscale physical and biological drivers in soil carbon dynamics models?. Ecological Modelling, 383, 10-22. https://doi.org/10.1016/j.ecolmodel.2018.05.007

Xu, W., Shang, B., Xu, Y., Yuan, X., Dore, A. J., Zhao, Y., Massad, R.-S., Feng, Z., 2018. Effects of elevated ozone concentration and nitrogen addition on ammonia stomatal compensation point in a poplar clone. Environmental Pollution, 238, 760-770. https://doi.org/10.1016/j.envpol.2018.03.089